OBO Foundry dashboard analysis¶

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/tmp/ipykernel_461/4293058459.py:21: FutureWarning:

The `inplace` parameter in pandas.Categorical.reorder_categories is deprecated and will be removed in a future version. Reordering categories will always return a new Categorical object.

Ontologies by number of axioms

Ontologies by number of classes

Ontologies by how many ontologies use it

Different serialisations used

RDF/XML Syntax    3
Name: syntax, dtype: int64

Breakdown of used Axiom Types

count mean std min 25% 50% 75% max
AnnotationAssertion 3 7509.333333 12124.846652 372.0 509.5 647.0 11078.0 21509.0
InverseObjectProperties 3 7.666667 5.686241 3.0 4.5 6.0 10.0 14.0
Declaration 3 737.666667 1018.470094 115.0 150.0 185.0 1049.0 1913.0
SubClassOf 3 4328.666667 7232.468550 148.0 153.0 158.0 6419.0 12680.0
SubObjectPropertyOf 3 8.000000 2.000000 6.0 7.0 8.0 9.0 10.0
DisjointClasses 3 9.000000 10.440307 2.0 3.0 4.0 12.5 21.0
FunctionalObjectProperty 2 0.666667 0.577350 0.0 0.5 1.0 1.0 1.0
ObjectPropertyDomain 2 5.333333 7.571878 0.0 1.0 2.0 8.0 14.0
ObjectPropertyRange 2 5.333333 8.386497 0.0 0.5 1.0 8.0 15.0
EquivalentClasses 2 5.666667 4.932883 0.0 4.0 8.0 8.5 9.0
TransitiveObjectProperty 2 3.333333 3.055050 0.0 2.0 4.0 5.0 6.0
ClassAssertion 1 6.333333 10.969655 0.0 0.0 0.0 9.5 19.0
SubAnnotationPropertyOf 1 5.666667 9.814955 0.0 0.0 0.0 8.5 17.0
Rule 1 1.333333 2.309401 0.0 0.0 0.0 2.0 4.0
IrrefexiveObjectProperty 1 0.333333 0.577350 0.0 0.0 0.0 0.5 1.0
InverseFunctionalObjectProperty 1 0.333333 0.577350 0.0 0.0 0.0 0.5 1.0
DifferentIndividuals 1 0.666667 1.154701 0.0 0.0 0.0 1.0 2.0
DataPropertyRange 1 3.333333 5.773503 0.0 0.0 0.0 5.0 10.0
AnnotationPropertyRangeOf 1 0.333333 0.577350 0.0 0.0 0.0 0.5 1.0
SymmetricObjectProperty 1 0.333333 0.577350 0.0 0.0 0.0 0.5 1.0
FunctionalDataProperty 1 0.666667 1.154701 0.0 0.0 0.0 1.0 2.0
SubDataPropertyOf 1 0.333333 0.577350 0.0 0.0 0.0 0.5 1.0
ReflexiveObjectProperty 1 0.666667 1.154701 0.0 0.0 0.0 1.0 2.0
SubPropertyChainOf 1 0.666667 1.154701 0.0 0.0 0.0 1.0 2.0

Breakdown of used OWL Class Expression constructs

count mean std min 25% 50% 75% max
Class 3 9065.333333 14939.517708 432.0 440.0 448.0 13382.0 26316.0
ObjectIntersectionOf 2 1.333333 1.154701 0.0 1.0 2.0 2.0 2.0
ObjectSomeValuesFrom 2 3044.000000 5213.583796 0.0 34.0 68.0 4566.0 9064.0
DataSomeValuesFrom 1 3.666667 6.350853 0.0 0.0 0.0 5.5 11.0
ObjectUnionOf 1 0.666667 1.154701 0.0 0.0 0.0 1.0 2.0
DataHasValue 1 309.333333 535.781050 0.0 0.0 0.0 464.0 928.0
ObjectComplementOf 1 0.666667 1.154701 0.0 0.0 0.0 1.0 2.0
ObjectOneOf 1 1.000000 1.732051 0.0 0.0 0.0 1.5 3.0

OBO Score (Experimental)

ontology score score_dash score_impact
1 gndo 0.400 0.800 0.0
2 occo 0.374 0.749 0.0
0 carolio 0.371 0.742 0.0

OBO Score Summary

count mean std min 25% 50% 75% max
score 3.0 0.381667 0.015948 0.371 0.3725 0.374 0.3870 0.4
score_dash 3.0 0.763667 0.031660 0.742 0.7455 0.749 0.7745 0.8
score_impact 3.0 0.000000 0.000000 0.000 0.0000 0.000 0.0000 0.0

OBO dependency graph